IL_4KZY_056

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

4KZY|1|i|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZY_056 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1947

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4KZY|1|i|G|948
4KZY|1|i|C|949
4KZY|1|i|U|950
4KZY|1|i|A|951
4KZY|1|i|G|952
*
4KZY|1|i|C|963
4KZY|1|i|U|964
4KZY|1|i|U|965
4KZY|1|i|G|966
4KZY|1|i|G|967
4KZY|1|i|A|968
4KZY|1|i|C|969
4KZY|1|i|C|970

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain B

40S Ribosomal Protein S3A

Chain O

40S Ribosomal Protein S14