3D structure

PDB id
4KZY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.
Experimental method
X-RAY DIFFRACTION
Resolution
7.01 Å

Loop

Sequence
GAAAAAAUU*ACCGCAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4KZY_131 not in the Motif Atlas
Homologous match to IL_8CRE_430
Geometric discrepancy: 0.4206
The information below is about IL_8CRE_430
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_59049.2
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

4KZY|1|i|G|803
4KZY|1|i|A|804
4KZY|1|i|A|805
4KZY|1|i|A|806
4KZY|1|i|A|807
4KZY|1|i|A|808
4KZY|1|i|A|809
4KZY|1|i|U|810
4KZY|1|i|U|811
*
4KZY|1|i|A|845
4KZY|1|i|C|846
4KZY|1|i|C|847
4KZY|1|i|G|848
4KZY|1|i|C|849
4KZY|1|i|A|850
4KZY|1|i|G|851
4KZY|1|i|C|852

Current chains

Chain i
18S Ribosomal RNA

Nearby chains

Chain E
40S Ribosomal Protein S4X
Chain J
40S Ribosomal Protein S9
Chain L
40S Ribosomal Protein S11
Chain W
40S Ribosomal Protein S15A

Coloring options:


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