Motif IL_59049.4 Version IL_59049.4 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-13 | 9-10 | 13-15 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_194 | 9H3G | 0.3106 | 0 | h1 | SSU rRNA | G | 754 | A | 755 | A | 756 | G | 757 | A | 758 | A | 759 | A | 760 | PSU | 761 | PSU | 762 | * | A2M | 794 | C | 795 | A | 796 | U | 797 | U | 798 | A2M | 799 | G | 800 | C | 801 | cWW | cWW | cWW | ||
| 2 | IL_8GLP_330 | 8GLP | 0.0000 | 0 | S2 | SSU rRNA | G | 807 | A | 808 | A | 809 | A | 810 | A | 811 | A | 812 | A | 813 | PSU | 814 | PSU | 815 | * | A | 849 | C | 850 | C | 851 | G | 852 | C | 853 | A | 854 | G | 855 | C | 856 | cWW | cWW | cWW | ||
| 3 | IL_9PN5_180 | 9PN5 | 0.3420 | 0 | B5 | SSU rRNA | G | 751 | A | 752 | A | 753 | A | 754 | A | 755 | A | 756 | A | 757 | U | 758 | PSU | 759 | * | A | 791 | U | 792 | A | 793 | U | 794 | U | 795 | A | 796 | G | 797 | C | 798 | cWW | ncWW | cWW | ||
| 4 | IL_8CRE_430 | 8CRE | 0.4028 | 0 | CM | SSU rRNA | G | 736 | A | 737 | A | 738 | A | 739 | A | 740 | A | 741 | A | 742 | U | 743 | U | 744 | * | A | 775 | U | 776 | A | 777 | U | 778 | U | 779 | A | 780 | G | 781 | C | 782 | cWW | cWW | ncWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGAAA(PSU)(PSU)*(A2M)CAUU(A2M)GC | 1 |
| GAAAAAA(PSU)(PSU)*ACCGCAGC | 1 |
| GAAAAAAU(PSU)*AUAUUAGC | 1 |
| GAAAAAAUU*AUAUUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAAAU*UAUUAG | 2 |
| AAGAAA(PSU)*CAUU(A2M)G | 1 |
| AAAAAA(PSU)*CCGCAG | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.27 | Max 0.42
Coloring options: