IL_4KZZ_054

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

4KZZ|1|i|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_054 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1946

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4KZZ|1|i|G|948
4KZZ|1|i|C|949
4KZZ|1|i|U|950
4KZZ|1|i|A|951
4KZZ|1|i|G|952
*
4KZZ|1|i|C|963
4KZZ|1|i|U|964
4KZZ|1|i|U|965
4KZZ|1|i|G|966
4KZZ|1|i|G|967
4KZZ|1|i|A|968
4KZZ|1|i|C|969
4KZZ|1|i|C|970

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain B

40S Ribosomal Protein S3A

Chain O

40S Ribosomal Protein S14