IL_4KZZ_063

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_063 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1122

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4KZZ|1|i|G|1164
4KZZ|1|i|G|1165
4KZZ|1|i|A|1166
4KZZ|1|i|G|1167
4KZZ|1|i|U|1168
4KZZ|1|i|A|1169
4KZZ|1|i|U|1170
4KZZ|1|i|G|1171
*
4KZZ|1|i|U|1182
4KZZ|1|i|G|1183
4KZZ|1|i|A|1184
4KZZ|1|i|A|1185
4KZZ|1|i|A|1186
4KZZ|1|i|C|1187

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain X

40S Ribosomal Protein S23