IL_4KZZ_079

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_079 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.28

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4KZZ|1|i|C|1359
4KZZ|1|i|U|1360
4KZZ|1|i|G|1361
*
4KZZ|1|i|C|1370
4KZZ|1|i|G|1371

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain R

40S Ribosomal Protein S17

Chain a

40S Ribosomal Protein S26