IL_4KZZ_092

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4KZZ|1|i|C|1696, 4KZZ|1|i|A|1829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_092 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2107

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4KZZ|1|i|C|1695
4KZZ|1|i|C|1696
4KZZ|1|i|G|1697
*
4KZZ|1|i|C|1827
4KZZ|1|i|A|1828
4KZZ|1|i|A|1829
4KZZ|1|i|G|1830

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain Q

40S Ribosomal Protein S16

Chain a

40S Ribosomal Protein S26

Chain j

Transfer RNA; tRNA

Chain k

mRNA