IL_4KZZ_093

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_093 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.5302

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4KZZ|1|i|G|1697
4KZZ|1|i|C|1698
4KZZ|1|i|C|1699
4KZZ|1|i|C|1700
*
4KZZ|1|i|G|1823
4KZZ|1|i|U|1824
4KZZ|1|i|A|1825
4KZZ|1|i|A|1826
4KZZ|1|i|C|1827

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain O

40S Ribosomal Protein S14

Chain j

Transfer RNA; tRNA

Chain k

mRNA