IL_4KZZ_100

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_100 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.1108

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4KZZ|1|i|U|1728
4KZZ|1|i|G|1729
4KZZ|1|i|A|1730
4KZZ|1|i|G|1731
*
4KZZ|1|i|C|1792
4KZZ|1|i|G|1793
4KZZ|1|i|A|1794
4KZZ|1|i|A|1795

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain G

40S Ribosomal Protein S6

Chain I

40S Ribosomal Protein S8