IL_4KZZ_103

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_103 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2127

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4KZZ|1|i|C|1737
4KZZ|1|i|G|1738
4KZZ|1|i|G|1739
4KZZ|1|i|A|1740
4KZZ|1|i|U|1741
*
4KZZ|1|i|A|1782
4KZZ|1|i|G|1783
4KZZ|1|i|A|1784
4KZZ|1|i|A|1785
4KZZ|1|i|G|1786

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain G

40S Ribosomal Protein S6

Chain I

40S Ribosomal Protein S8