IL_4KZZ_114

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

GGUGCG*CCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_114 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3196

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4KZZ|1|i|G|686
4KZZ|1|i|G|687
4KZZ|1|i|U|688
4KZZ|1|i|G|689
4KZZ|1|i|C|690
4KZZ|1|i|G|691
*
4KZZ|1|i|C|725
4KZZ|1|i|C|726
4KZZ|1|i|G|727
4KZZ|1|i|U|728
4KZZ|1|i|C|729
4KZZ|1|i|C|730

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain J

40S Ribosomal Protein S9

Chain W

40S Ribosomal Protein S15A