IL_4KZZ_122

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

4KZZ|1|i|C|1399, 4KZZ|1|i|U|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_122 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.3668

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

4KZZ|1|i|A|1398
4KZZ|1|i|C|1399
4KZZ|1|i|U|1400
4KZZ|1|i|A|1401
*
4KZZ|1|i|U|1437
4KZZ|1|i|U|1438
4KZZ|1|i|C|1439
4KZZ|1|i|U|1440

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain Q

40S Ribosomal Protein S16

Chain U

40S Ribosomal Protein S20

Chain g

40S Ribosomal Protein RACK1