IL_8C3A_462

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8C3A|1|CM|A|1331, 8C3A|1|CM|U|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|A|1330
8C3A|1|CM|A|1331
8C3A|1|CM|U|1332
8C3A|1|CM|A|1333
*
8C3A|1|CM|U|1363
8C3A|1|CM|U|1364
8C3A|1|CM|C|1365
8C3A|1|CM|U|1366

Current chains

Chain CM

18S

Nearby chains

Chain CQ

Ribosomal protein S3

Chain DD

40S ribosomal protein S16

Chain DH

Ribosomal protein S10