IL_4L47_093

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4L47|1|RA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L47_093 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.0769

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4L47|1|RA|C|994
4L47|1|RA|C|995
4L47|1|RA|A|996
*
4L47|1|RA|U|1159
4L47|1|RA|G|1160

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30

Chain RN

50S ribosomal protein L13

Chain RU

50S ribosomal protein L20

Chain RV

50S ribosomal protein L21