IL_61258.12

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_7A0S_025	7A0S	1.8198	Single bulged C	X	LSU rRNA	G	938	C	939	G	940	*	C	863	C	864	cWW	ncWW
2	IL_5KPY_001	5KPY	1.4582	Single bulged C	A	5-hydroxytryptophan RNA aptamer	U	25	C	26	G	27	*	C	43	A	44	cWW	cWW
3	IL_3IVK_001	3IVK	1.6617	Single bulged C	M	class I ligase product	G	46	C	47	U	48	*	A	112	C	113	ncWW	cWW
4	IL_8F5G_002	8F5G	1.6632	Single bulged C	D	RNA	G	8	C	9	U	10	*	A	19	C	20	cWW	cWW
5	IL_3HHN_003	3HHN	1.5988	Single bulged C	E	Class I ligase ribozyme, self-ligation product	G	46	C	47	U	48	*	A	112	C	113	cWW	cWW
6	IL_6CK5_003	6CK5	1.6121	Single bulged C	A	Guanidine-I riboswitch	U	39	C	40	G	41	*	C	21	A	22	cWW	cWW
7	IL_7A0S_055	7A0S	1.5649	Single bulged C	X	LSU rRNA	G	1488	C	1489	U	1490	*	A	1534	C	1535	cWW	cWW
8	IL_3W3S_001	3W3S	1.6963	Single bulged C	B	Selenocysteine transfer RNA	G	11	C	11\|\|\|A	C	12	*	G	23	C	24	cWW	cWW
9	IL_3SNP_003	3SNP	1.7701	Single bulged C	D	ferritin H IRE RNA	G	7	C	8	U	9	*	A	24	C	25	cWW	cWW
10	IL_3SN2_001	3SN2	1.7083	Single bulged C	B	transferrin receptor iron regulatory element B RNA	U	7	C	8	G	9	*	C	24	A	25	cWW	cWW
11	IL_5TBW_069	5TBW	1.4589	Single bulged C	1	LSU rRNA	G	1778	C	1779	G	1780	*	C	1669	C	1670	cWW	cWW
12	IL_8C3A_075	8C3A	1.4902	Single bulged C	1	LSU rRNA	G	1774	C	1775	G	1776	*	C	1665	C	1666	cWW	cWW
13	IL_4V88_384	4V88	1.6791	Single bulged C	A6	SSU rRNA	U	24	C	25	A	26	*	U	600	A	601	cWW	cWW
14	IL_8C3A_392	8C3A	1.7873	Single bulged C	CM	SSU rRNA	U	24	C	25	A	26	*	U	598	A	599	cWW	cWW
15	IL_7A0S_010	7A0S	1.7006	Single bulged C	X	LSU rRNA	G	558	C	559	G	560	*	C	552	C	553	cWW	cWW
16	IL_5J7L_311	5J7L	1.6411	Single bulged C	DA	LSU rRNA	G	1731	C	1732	G	1733	*	C	1727	C	1728	ncWW	cWW
17	IL_7PMM_001	7PMM	1.7237	Single bulged C	D	RNA (45mer) containing HP92 of the 23S rRNA	U	33	C	34	G	35	*	C	13	A	14	cWW	cWW
18	IL_1DQH_001	1DQH	1.5800	Single bulged C	B+A	RNA (10-mer)	U	15	C	16	G	17	*	C	3	A	4	cWW	cWW
19	IL_5F5H_002	5F5H	1.4641	Single bulged C	D	RNA (21-mer)	G	18	C	19	U	20	*	A	4	C	5	cWW	cWW
20	IL_5F5H_001	5F5H	1.4607	Single bulged C	C	RNA (21-mer)	G	18	C	19	U	20	*	A	4	C	5	cWW	cWW
21	IL_1S03_002	1S03	1.3982	Single bulged C	A	47-MER	G	9	C	10	G	11	*	C	39	C	40	cWW	cWW
22	IL_4WF9_035	4WF9	1.4916	Single bulged C	X	LSU rRNA	C	1038	C	1039	A	1040	*	U	1203	G	1204	cWW	cWW
23	IL_7RQB_035	7RQB	1.4939	Single bulged C	1A	LSU rRNA	C	994	C	995	A	996	*	U	1159	G	1160	cWW	cWW
24	IL_5J7L_276	5J7L	1.4658	Single bulged C	DA	LSU rRNA	C	994	C	995	A	996	*	U	1159	G	1160	cWW	cWW
25	IL_7A0S_032	7A0S	1.4889	Single bulged C	X	LSU rRNA	U	1005	C	1006	A	1007	*	U	1170	A	1171	cWW	cWW
26	IL_7KGA_004	7KGA	1.5598	Single bulged C	B	Flavivirus DB element	A	44	C	45	U	46	*	A	10	U	11	cWW	cWW
27	IL_1DQF_001	1DQF	1.5096	Single bulged C	B+A	RNA (10-mer)	U	15	C	16	G	17	*	C	3	A	4	cWW	cWW
28	IL_1S03_006	1S03	1.4485	Single bulged C	B	47-MER	G	9	C	10	G	11	*	C	39	C	40	cWW	cWW
29	IL_6XKO_001	6XKO	1.4131	Single bulged C	A	PreQ1-III riboswitch	G	78	C	79	G	80	*	C	56	C	57	cWW	cWW
30	IL_7KGA_001	7KGA	1.4583	Single bulged C	A	Flavivirus DB element	A	44	C	45	U	46	*	A	10	U	11	cWW	cWW
31	IL_6ZDP_001	6ZDP	1.1930	Single bulged C	B	Chains: B	A	1346	C	1347	U	1348	*	A	1290	U	1291	cWW	cWW
32	IL_8C3A_152	8C3A	1.0614	Single bulged C	4	5.8S rRNA	U	90	C	91	A	92	*	U	67	A	68	cWW	cWW
33	IL_8C3A_002	8C3A	0.9802	Single bulged C	4+1	5.8S rRNA	G	150	C	151	G	152	*	C	6	C	7	cWW	cWW
34	IL_5TBW_002	5TBW	0.9644	Single bulged C	4+1	5.8S rRNA	G	150	C	151	G	152	*	C	7	C	8	cWW	cWW
35	IL_3DIL_001	3DIL	1.3942	Single bulged C	A	RNA (174-MER)	G	12	C	13	G	14	*	C	78	C	79	cWW	cWW
36	IL_3D0U_001	3D0U	1.5310	Single bulged C	A	Lysine Riboswitch RNA	G	9	C	10	G	11	*	C	75	C	76	cWW	cWW
37	IL_4C7O_003	4C7O	1.5210	Single bulged C	E	SRP RNA	C	31	C	32	G	33	*	C	12	G	13	cWW	cWW
38	IL_3SN2_002	3SN2	1.3125	Single bulged C	B	transferrin receptor iron regulatory element B RNA	G	18	C	19	C	20	*	G	13	C	14	cWW	cWW
39	IL_1KUQ_002	1KUQ	0.7686	Single bulged C	B	16S RIBOSOMAL RNA FRAGMENT	C	46	C	47	C	48	*	G	21	G	22	cWW	cWW
40	IL_7RQB_108	7RQB	0.0000	Single bulged C	1A	LSU rRNA	U	2878	C	2879	C	2880	*	G	2838	G	2839	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCG*CC	12
GCU*AC	7
UCG*CA	6
UCA*UA	4
CCA*UG	3
ACU*AU	3
GCC*GC	2
CCG*CG	1
CCC*GG	1
UCC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
C*	40

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_61258.12 Version IL_61258.12 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_61258.12 Version IL_61258.12 of this group appears in releases 3.80 to 3.86

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Csv

Json