IL_4L71_051

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_051 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1276

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4L71|1|QA|G|1401
4L71|1|QA|C|1402
4L71|1|QA|C|1403
4L71|1|QA|C|1404
*
4L71|1|QA|G|1497
4L71|1|QA|U|1498
4L71|1|QA|A|1499
4L71|1|QA|A|1500
4L71|1|QA|C|1501

Current chains

Chain QA

16S Ribosomal RNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

A-site ASL SufA6

Chain RA

Large subunit ribosomal RNA; LSU rRNA