3D structure

PDB id
4L71 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
4L71|1|XA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4L71_203 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1109
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

4L71|1|XA|G|683
4L71|1|XA|A|684
4L71|1|XA|G|685
4L71|1|XA|U|686
4L71|1|XA|A|687
4L71|1|XA|G|688
*
4L71|1|XA|C|699
4L71|1|XA|G|700
4L71|1|XA|C|701
4L71|1|XA|A|702
4L71|1|XA|G|703
4L71|1|XA|A|704
4L71|1|XA|U|705
4L71|1|XA|A|706
4L71|1|XA|C|707

Current chains

Chain XA
16S Ribosomal RNA

Nearby chains

Chain XK
30S ribosomal protein S11
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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