IL_4L71_228

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_228 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1148

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

4L71|1|XA|G|1416
4L71|1|XA|G|1417
4L71|1|XA|A|1418
4L71|1|XA|G|1419
*
4L71|1|XA|U|1481
4L71|1|XA|G|1482
4L71|1|XA|A|1483
4L71|1|XA|C|1484

Current chains

Chain XA

16S Ribosomal RNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain YA

Large subunit ribosomal RNA; LSU rRNA