IL_4L71_275

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4L71|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4L71_275 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2306

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4L71|1|YA|G|1087
4L71|1|YA|A|1088
4L71|1|YA|G|1089
4L71|1|YA|U|1090
4L71|1|YA|G|1091
*
4L71|1|YA|C|1100
4L71|1|YA|U|1101
4L71|1|YA|C|1102

Current chains

Chain YA

23S Ribosomal RNA

Nearby chains

Chain Y9

50S ribosomal protein L36