IL_4LEL_196

3D structure

PDB id

4LEL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGU*AUACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LEL_196 not in the Motif Atlas

Geometric match to IL_4WF9_012

Geometric discrepancy: 0.375

The information below is about IL_4WF9_012

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4LEL|1|XA|C|596
4LEL|1|XA|G|597
4LEL|1|XA|U|598
*
4LEL|1|XA|A|640
4LEL|1|XA|U|641
4LEL|1|XA|A|642
4LEL|1|XA|C|643
4LEL|1|XA|G|644

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XQ

30S ribosomal protein S17