IL_4LF5_038

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF5_038 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1244

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4LF5|1|A|C|948
4LF5|1|A|A|949
4LF5|1|A|U|950
*
4LF5|1|A|G|1231
4LF5|1|A|U|1232
4LF5|1|A|G|1233

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

ribosomal protein S9

Chain M

ribosomal protein S13