IL_4LF8_011

3D structure

PDB id

4LF8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4LF8|1|A|U|244, 4LF8|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF8_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0447

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4LF8|1|A|C|242
4LF8|1|A|A|243
4LF8|1|A|U|244
4LF8|1|A|C|245
4LF8|1|A|A|246
4LF8|1|A|G|247
*
4LF8|1|A|C|277
4LF8|1|A|G|278
4LF8|1|A|A|279
4LF8|1|A|C|280
4LF8|1|A|G|281
4LF8|1|A|A|282
4LF8|1|A|C|283
4LF8|1|A|G|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17