IL_4LF9_020

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.044

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4LF9|1|A|C|504
4LF9|1|A|G|505
4LF9|1|A|G|506
4LF9|1|A|C|507
4LF9|1|A|C|508
4LF9|1|A|A|509
4LF9|1|A|A|510
4LF9|1|A|C|511
*
4LF9|1|A|G|540
4LF9|1|A|G|541

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12