IL_4LF9_037

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4LF9|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.054

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4LF9|1|A|G|933
4LF9|1|A|C|934
4LF9|1|A|A|935
*
4LF9|1|A|U|1380
4LF9|1|A|U|1381
4LF9|1|A|C|1382
4LF9|1|A|C|1383
4LF9|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9