IL_4LF9_048

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_048 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.0499

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4LF9|1|A|C|1158
4LF9|1|A|U|1159
4LF9|1|A|G|1160
4LF9|1|A|C|1161
*
4LF9|1|A|G|1175
4LF9|1|A|A|1176
4LF9|1|A|G|1177
4LF9|1|A|G|1178
4LF9|1|A|A|1179
4LF9|1|A|A|1180
4LF9|1|A|G|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain I

ribosomal protein S9