IL_4LF9_069

3D structure

PDB id

4LF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LF9_069 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.0687

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4LF9|1|A|5MC|1407
4LF9|1|A|A|1408
4LF9|1|A|C|1409
*
4LF9|1|A|G|1491
4LF9|1|A|A|1492
4LF9|1|A|A|1493
4LF9|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

ribosomal protein S12