3D structure

PDB id
4LFA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFA_035 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0667
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4LFA|1|A|G|887
4LFA|1|A|G|888
4LFA|1|A|A|889
4LFA|1|A|G|890
4LFA|1|A|U|891
4LFA|1|A|A|892
4LFA|1|A|C|893
4LFA|1|A|G|894
*
4LFA|1|A|U|905
4LFA|1|A|G|906
4LFA|1|A|A|907
4LFA|1|A|A|908
4LFA|1|A|A|909
4LFA|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1098 s