IL_4LFA_066

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFA_066 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0625

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4LFA|1|A|G|673
4LFA|1|A|G|674
4LFA|1|A|A|675
4LFA|1|A|A|676
4LFA|1|A|U|677
*
4LFA|1|A|G|713
4LFA|1|A|G|714
4LFA|1|A|A|715
4LFA|1|A|A|716
4LFA|1|A|C|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain K

ribosomal protein S11

Chain R

ribosomal protein S18