3D structure

PDB id
4LFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFC_026 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.0939
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4LFC|1|A|U|605
4LFC|1|A|G|606
4LFC|1|A|A|607
4LFC|1|A|A|608
4LFC|1|A|A|609
4LFC|1|A|G|610
4LFC|1|A|A|611
4LFC|1|A|C|612
*
4LFC|1|A|G|628
4LFC|1|A|G|629
4LFC|1|A|G|630
4LFC|1|A|G|631
4LFC|1|A|A|632
4LFC|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4
Chain H
ribosomal protein S8
Chain P
ribosomal protein S16

Coloring options:


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