IL_4LFC_031

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4LFC|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFC_031 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0563

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4LFC|1|A|G|683
4LFC|1|A|A|684
4LFC|1|A|G|685
4LFC|1|A|U|686
4LFC|1|A|A|687
4LFC|1|A|G|688
*
4LFC|1|A|C|699
4LFC|1|A|G|700
4LFC|1|A|C|701
4LFC|1|A|A|702
4LFC|1|A|G|703
4LFC|1|A|A|704
4LFC|1|A|U|705
4LFC|1|A|A|706
4LFC|1|A|C|707

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

ribosomal protein S11

Chain R

ribosomal protein S18