IL_4LFC_037

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4LFC|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFC_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.061

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4LFC|1|A|G|933
4LFC|1|A|C|934
4LFC|1|A|A|935
*
4LFC|1|A|U|1380
4LFC|1|A|U|1381
4LFC|1|A|C|1382
4LFC|1|A|C|1383
4LFC|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

ribosomal protein S7

Chain I

ribosomal protein S9