3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFZ_026 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.3111
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4LFZ|1|QA|U|605
4LFZ|1|QA|G|606
4LFZ|1|QA|A|607
4LFZ|1|QA|A|608
4LFZ|1|QA|A|609
4LFZ|1|QA|G|610
4LFZ|1|QA|A|611
4LFZ|1|QA|C|612
*
4LFZ|1|QA|G|628
4LFZ|1|QA|G|629
4LFZ|1|QA|G|630
4LFZ|1|QA|G|631
4LFZ|1|QA|A|632
4LFZ|1|QA|G|633

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QD
30S ribosomal protein S4
Chain QH
30S ribosomal protein S8
Chain QP
30S ribosomal protein S16

Coloring options:


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