IL_4LFZ_050

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_050 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1465

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4LFZ|1|QA|G|1401
4LFZ|1|QA|C|1402
4LFZ|1|QA|C|1403
4LFZ|1|QA|C|1404
*
4LFZ|1|QA|G|1497
4LFZ|1|QA|U|1498
4LFZ|1|QA|A|1499
4LFZ|1|QA|A|1500
4LFZ|1|QA|C|1501

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain QX

A-site ASL SufA6

Chain RA

Large subunit ribosomal RNA; LSU rRNA