IL_4LFZ_128

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_128 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1267

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4LFZ|1|RA|G|1856
4LFZ|1|RA|G|1857
4LFZ|1|RA|G|1858
4LFZ|1|RA|A|1859
4LFZ|1|RA|G|1860
*
4LFZ|1|RA|C|1882
4LFZ|1|RA|G|1883
4LFZ|1|RA|A|1884
4LFZ|1|RA|A|1885
4LFZ|1|RA|C|1886

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28