IL_4LFZ_150

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4LFZ|1|RA|G|2576, 4LFZ|1|RA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_150 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.1582

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4LFZ|1|RA|C|2510
4LFZ|1|RA|U|2511
4LFZ|1|RA|C|2512
*
4LFZ|1|RA|G|2574
4LFZ|1|RA|C|2575
4LFZ|1|RA|G|2576
4LFZ|1|RA|A|2577
4LFZ|1|RA|G|2578

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R5

50S ribosomal protein L32

Chain RE

50S ribosomal protein L3