IL_4LFZ_155

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_155 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.2592

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4LFZ|1|RA|C|2652
4LFZ|1|RA|U|2653
4LFZ|1|RA|A|2654
4LFZ|1|RA|G|2655
4LFZ|1|RA|U|2656
4LFZ|1|RA|A|2657
4LFZ|1|RA|C|2658
*
4LFZ|1|RA|G|2663
4LFZ|1|RA|G|2664
4LFZ|1|RA|A|2665
4LFZ|1|RA|C|2666
4LFZ|1|RA|C|2667
4LFZ|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6