IL_4LFZ_203

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4LFZ|1|XA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_203 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3017

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4LFZ|1|XA|U|921
4LFZ|1|XA|G|922
4LFZ|1|XA|A|923
*
4LFZ|1|XA|U|1393
4LFZ|1|XA|A|1394
4LFZ|1|XA|C|1395
4LFZ|1|XA|A|1396

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

30S ribosomal protein S5

Chain XX

A-site ASL SufA6