3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
CUGG*CUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LFZ_359 not in the Motif Atlas
Geometric match to IL_8ID2_001
Geometric discrepancy: 0.1991
The information below is about IL_8ID2_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_71194.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
29

Unit IDs

4LFZ|1|RA|C|2085
4LFZ|1|RA|U|2086
4LFZ|1|RA|G|2087
4LFZ|1|RA|G|2088
*
4LFZ|1|RA|C|2231
4LFZ|1|RA|U|2232
4LFZ|1|RA|U|2233
4LFZ|1|RA|G|2234

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R1
50S ribosomal protein L28
Chain RD
50S ribosomal protein L2

Coloring options:


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