IL_4LFZ_363

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CCCG*UGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_363 not in the Motif Atlas

Geometric match to IL_255D_001

Geometric discrepancy: 0.2344

The information below is about IL_255D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4LFZ|1|XA|C|186
4LFZ|1|XA|C|186|||A
4LFZ|1|XA|C|186|||B
4LFZ|1|XA|G|186|||C
*
4LFZ|1|XA|U|191|||D
4LFZ|1|XA|G|191|||E
4LFZ|1|XA|U|191|||F
4LFZ|1|XA|G|191

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20