IL_4LFZ_384

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4LFZ|1|QA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_384 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1734

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4LFZ|1|QA|G|933
4LFZ|1|QA|C|934
4LFZ|1|QA|A|935
*
4LFZ|1|QA|U|1380
4LFZ|1|QA|U|1381
4LFZ|1|QA|C|1382
4LFZ|1|QA|C|1383
4LFZ|1|QA|C|1384

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QI

30S ribosomal protein S9

Chain QV

Transfer RNA; tRNA