3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LNT_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0753
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4LNT|1|QA|G|887
4LNT|1|QA|G|888
4LNT|1|QA|A|889
4LNT|1|QA|G|890
4LNT|1|QA|U|891
4LNT|1|QA|A|892
4LNT|1|QA|C|893
4LNT|1|QA|G|894
*
4LNT|1|QA|U|905
4LNT|1|QA|G|906
4LNT|1|QA|A|907
4LNT|1|QA|A|908
4LNT|1|QA|A|909
4LNT|1|QA|C|910

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QQ
30S ribosomal protein S17

Coloring options:


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