IL_4LNT_053

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LNT_053 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.1704

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4LNT|1|QA|G|1405
4LNT|1|QA|U|1406
4LNT|1|QA|C|1407
*
4LNT|1|QA|G|1494
4LNT|1|QA|U|1495
4LNT|1|QA|C|1496

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QX

A-site ASL SufA6

Chain QY

messenger RNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA