IL_4LNT_125

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4LNT|1|RA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LNT_125 not in the Motif Atlas

Geometric match to IL_7RQB_067

Geometric discrepancy: 0.062

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4LNT|1|RA|A|1669
4LNT|1|RA|C|1670
4LNT|1|RA|U|1671
4LNT|1|RA|C|1672
4LNT|1|RA|U|1673
4LNT|1|RA|G|1674
*
4LNT|1|RA|C|1990
4LNT|1|RA|U|1991
4LNT|1|RA|G|1992
4LNT|1|RA|U|1993

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14