IL_4LNT_250

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LNT_250 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1013

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4LNT|1|YA|U|606
4LNT|1|YA|U|607
4LNT|1|YA|A|608
4LNT|1|YA|A|609
4LNT|1|YA|G|609|||A
*
4LNT|1|YA|C|618|||A
4LNT|1|YA|G|619
4LNT|1|YA|G|620
4LNT|1|YA|A|621
4LNT|1|YA|G|622

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15