IL_4LNT_277

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4LNT|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LNT_277 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2101

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

4LNT|1|YA|G|1087
4LNT|1|YA|A|1088
4LNT|1|YA|G|1089
4LNT|1|YA|U|1090
4LNT|1|YA|G|1091
*
4LNT|1|YA|C|1100
4LNT|1|YA|U|1101
4LNT|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36