3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
4LSK|1|RA|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_158 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.0992
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

4LSK|1|RA|U|2636
4LSK|1|RA|U|2637
4LSK|1|RA|G|2638
4LSK|1|RA|A|2639
4LSK|1|RA|G|2640
*
4LSK|1|RA|C|2774
4LSK|1|RA|A|2775
4LSK|1|RA|A|2776
4LSK|1|RA|G|2777
4LSK|1|RA|A|2778
4LSK|1|RA|U|2779
4LSK|1|RA|G|2780
4LSK|1|RA|A|2781
4LSK|1|RA|G|2782

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13

Coloring options:


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