3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_191 not in the Motif Atlas
Homologous match to IL_4LFB_019
Geometric discrepancy: 0.1377
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

4LSK|1|XA|G|450
4LSK|1|XA|A|451
4LSK|1|XA|A|452
4LSK|1|XA|A|453
4LSK|1|XA|C|454
4LSK|1|XA|C|455
*
4LSK|1|XA|G|477
4LSK|1|XA|A|478
4LSK|1|XA|C|479
4LSK|1|XA|U|480
4LSK|1|XA|G|481
4LSK|1|XA|A|482
4LSK|1|XA|C|483

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XP
30S ribosomal protein S16

Coloring options:


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