3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GA*UCC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_260 not in the Motif Atlas
Homologous match to IL_7RQB_028
Geometric discrepancy: 0.0769
The information below is about IL_7RQB_028
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_42622.4
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
33

Unit IDs

4LSK|1|YA|G|862
4LSK|1|YA|A|863
*
4LSK|1|YA|U|913
4LSK|1|YA|C|914
4LSK|1|YA|C|915

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YB
5S ribosomal RNA; 5S rRNA
Chain YQ
50S ribosomal protein L16

Coloring options:


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