3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
4LSK|1|YA|A|1127, 4LSK|1|YA|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_271 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.061
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4LSK|1|YA|G|1024
4LSK|1|YA|G|1025
4LSK|1|YA|U|1026
4LSK|1|YA|A|1027
4LSK|1|YA|A|1028
4LSK|1|YA|A|1029
4LSK|1|YA|G|1030
*
4LSK|1|YA|C|1124
4LSK|1|YA|G|1125
4LSK|1|YA|A|1126
4LSK|1|YA|A|1127
4LSK|1|YA|A|1128
4LSK|1|YA|A|1129
4LSK|1|YA|U|1130
4LSK|1|YA|G|1131
4LSK|1|YA|A|1132
4LSK|1|YA|U|1133
4LSK|1|YA|C|1135
4LSK|1|YA|G|1136
4LSK|1|YA|G|1137
4LSK|1|YA|G|1138
4LSK|1|YA|G|1139
4LSK|1|YA|C|1140

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y9
50S ribosomal protein L36
Chain YB
5S ribosomal RNA; 5S rRNA
Chain YE
50S ribosomal protein L3
Chain YN
50S ribosomal protein L13
Chain YQ
50S ribosomal protein L16

Coloring options:


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