IL_4LSK_298

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4LSK|1|YA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LSK_298 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0906

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4LSK|1|YA|A|1669
4LSK|1|YA|C|1670
4LSK|1|YA|U|1671
4LSK|1|YA|C|1672
4LSK|1|YA|U|1673
4LSK|1|YA|G|1674
*
4LSK|1|YA|C|1990
4LSK|1|YA|U|1991
4LSK|1|YA|G|1992
4LSK|1|YA|U|1993

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YO

50S ribosomal protein L14